| PFPrairie Farms Dairy - Rochester | Rochester, MN | Food Manufacturing311513 | 20–99 | ◐ LIKELY ACTIVE |
| RFReichel Foods Inc. | Rochester, MN | Food Manufacturing311991 | — | ◐ LIKELY ACTIVE |
| SFSeneca Foods Rochester | Rochester, MN | Food Manufacturing311411 | 100–499 | ◐ LIKELY ACTIVE |
Valley Design Enterprises INC | Fountain, MN | Fabricated Metal Product Manufacturing332812 | 20–99 | ◐ LIKELY ACTIVE |
| WMWaters Medical Systems LLC | Rochester, MN | Computer and Electronic Product Manufacturing334510 | 1–19 | ◐ LIKELY ACTIVE |
| RIRpu - Ibm Peaking Diesel Generators | Rochester, MN | Computer and Electronic Product Manufacturing334111 | — | ◐ LIKELY ACTIVE |
Associated Milk Producers INC | Rochester, MN | Food Manufacturing311511 | — | ◇ UNVERIFIED |
| BCBalchem CORP - Ifp Hayfield | Hayfield, MN | Food Manufacturing311423 | — | ◇ UNVERIFIED |
| CCCollision Connection LLC | Lake, MN | Food Manufacturing311111 | — | ◇ UNVERIFIED |
| CPCrenlo - Plant 3 | Rochester, MN | Fabricated Metal Product Manufacturing332999 | — | ◇ UNVERIFIED |
| EIEarly Iron Restoration | Rochester, MN | Primary Metal Manufacturing331110 | — | ◇ UNVERIFIED |
| HCHalcon CORP | Stewartville, MN | Furniture and Related Product Manufacturing337110 | — | ◇ UNVERIFIED |
| MLMinnergy LLC | Eyota, MN | Chemical Manufacturing325193 | — | ◇ UNVERIFIED |
| PMPlainview Milk Products Coope | Plainview, MN | Food Manufacturing311514 | — | ◇ UNVERIFIED |
| PAProgressive Ag Center, L.l.c. | Stewartville, MN | Food Manufacturing311119 | — | ◇ UNVERIFIED |
| RMRochester Medical CORP - Site 2 | Stewartville, MN | Plastics and Rubber Products Manufacturing326121 | — | ◇ UNVERIFIED |
| RSRochester Sand & Gravel - Plant 53 | Rochester, MN | Petroleum and Coal Products Manufacturing324121 | — | ◇ UNVERIFIED |
| SPSchmidt Printing | Byron, MN | Printing and Related Support Activities323110 | — | ◇ UNVERIFIED |
| SFSeneca Foods CORP | Rochester, MN | Food Manufacturing311411 | — | ◇ UNVERIFIED |
| SEShamrock Enterprises - Nonmetallic | Rochester, MN | Machinery Manufacturing333131 | — | ◇ UNVERIFIED |
| SDSuperior Drive Support Center | Rochester, MN | Computer and Electronic Product Manufacturing334418 | — | ◇ UNVERIFIED |
| TRTam Refinishes LLC | Dodge Center, MN | Fabricated Metal Product Manufacturing332812 | — | ◇ UNVERIFIED |
| TATrw Automotive | Rushford, MN | Transportation Equipment Manufacturing336322 | — | ◇ UNVERIFIED |
Tuohy Furniture CORP - Plant 5 | Chatfield, MN | Furniture and Related Product Manufacturing337211 | — | ◇ UNVERIFIED |
| WEWelsh Equipment INC | Dodge Center, MN | Fabricated Metal Product Manufacturing332999 | — | ◇ UNVERIFIED |
| 0057-pl001 | Rochester, MN | Food Manufacturing311513 | 100–499 | ◐ LIKELY ACTIVE |
| RN"4007 - Rochester Nail Plant" | Rochester, MN | Fabricated Metal Product Manufacturing332510 | 20–99 | ◐ LIKELY ACTIVE |
| AapplesRus | Rochester, MN | Beverage and Tobacco Product Manufacturing312140 | — | ◐ LIKELY ACTIVE |
| AMArdent Mills Lake City | Lake City, MN | Food Manufacturing311211 | 20–99 | ◐ LIKELY ACTIVE |
| BRBenchmark Rochester | Rochester, MN | Computer and Electronic Product Manufacturing334418 | 500+ | ◐ LIKELY ACTIVE |
| BIBranding Iron Holdings | Rochester, MN | Food Manufacturing311612 | — | ◐ LIKELY ACTIVE |
| BIBranding Iron Holdings - Rochester Meat Company | Rochester, MN | Food Manufacturing311612 | 100–499 | ◐ LIKELY ACTIVE |
| BMBurt's Meat & Poultry | Eyota, MN | Food Manufacturing311611 | — | ◐ LIKELY ACTIVE |
| CHCardinal Health Wabasha/ KPR US LLC | Wabasha, MN | Computer and Electronic Product Manufacturing334510 | 20–99 | ◐ LIKELY ACTIVE |
| CDCTM - Dodge Center | Dodge Center, MN | Transportation Equipment Manufacturing336211 | 100–499 | ◐ LIKELY ACTIVE |
| DLDbm LLC | Rochester, MN | Miscellaneous Manufacturing339113 | — | ◐ LIKELY ACTIVE |
| HCHalcon Corporation | Stewatville, MN | Furniture and Related Product Manufacturing337211 | 100–499 | ◐ LIKELY ACTIVE |
| KRKerry Rochester, MN | Rochester, MN | Food Manufacturing311514 | 20–99 | ◐ LIKELY ACTIVE |
| LCLake City, MN - 565 | Lake City, MN | Wood Product Manufacturing321920 | 20–99 | ◐ LIKELY ACTIVE |
| LCLake City Plant | Lake City, MN | Machinery Manufacturing333414 | 100–499 | ◐ LIKELY ACTIVE |
| NINanodropper INC | Rochester, MN | Miscellaneous Manufacturing339115 | — | ◐ LIKELY ACTIVE |
| NHNew Hudson Facades - MN R | Rochester, MN | Fabricated Metal Product Manufacturing332323 | 1–19 | ◐ LIKELY ACTIVE |
| PFPatton Family Vineyard, INC. | Rochester, MN | Beverage and Tobacco Product Manufacturing312130 | — | ◐ LIKELY ACTIVE |
| PLPhotobiosciences LLC | Rochester, MN | Chemical Manufacturing325411 | — | ◐ LIKELY ACTIVE |
| PMPlainview Milk Products Cooperative | Plainview, MN | Food Manufacturing311514 | 20–99 | ◐ LIKELY ACTIVE |
| RCRochester Cookie Company | Rochester, MN | Food Manufacturing311821 | 20–99 | ◐ LIKELY ACTIVE |
| RMRushford Manufacturing | Rushford, MN | Fabricated Metal Product Manufacturing332312 | 20–99 | ◐ LIKELY ACTIVE |
| SGSalem Glen Vineyard and Winery | Rochester, MN | Beverage and Tobacco Product Manufacturing312130 | — | ◐ LIKELY ACTIVE |
| SCSEK Corporation / Kleitsch | Kasson, MN | Nonmetallic Mineral Product Manufacturing327390 | 1–19 | ◐ LIKELY ACTIVE |
| SBSquash Blossom Farm | Oronoco, MN | Beverage and Tobacco Product Manufacturing312130 | — | ◐ LIKELY ACTIVE |