 Agri Spray Drones, LLC | Boonville | Transportation Equipment Manufacturing | 336411 | — | ● ACTIVE |
 Boonslick Spice Company LLC | Boonville | Food Manufacturing | 311941 | — | ● ACTIVE |
| HBHuebert Brothers Products LLC | Boonville | Wood Product Manufacturing | 321219 | — | ◐ LIKELY ACTIVE |
| CICaterpillar INC. | Boonville | Chemical Manufacturing | 325199 | — | ◇ UNVERIFIED |
| MBMissouri Better Bean | Bunceton | Food Manufacturing | 311225 | — | ◐ LIKELY ACTIVE |
| AMApac Missouri-boonville Asphalt Plant | Boonville | Petroleum and Coal Products Manufacturing | 324121 | — | ◇ UNVERIFIED |
| BBButternutt Bread-interstate Brands CORP | Boonville | Food Manufacturing | 311812 | — | ◇ UNVERIFIED |
| CMC M M G | Boonville | Fabricated Metal Product Manufacturing | 332994 | — | ◇ UNVERIFIED |
| FHFuqua Homes INC | Boonville | Wood Product Manufacturing | 321991 | — | ◇ UNVERIFIED |
| FHFuqua Homes of Missouri INC | Boonville | Wood Product Manufacturing | 321991 | — | ◇ UNVERIFIED |
| MPMid-missouri Printing - Mid-missouri Printing | Boonville | Printing and Related Support Activities | 323110 | — | ◇ UNVERIFIED |
| NINordyne Inc-boonville Plant | Boonville | Machinery Manufacturing | 333415 | — | ◇ UNVERIFIED |
| COCooper's Oak Winery | Boonville | Beverage and Tobacco Product Manufacturing | 312130 | — | ◐ LIKELY ACTIVE |
| HBHPMP Boonville Facility | Boonville | Plastics and Rubber Products Manufacturing | 326291 | 100–499 | ◐ LIKELY ACTIVE |
| HFHuebert Fiberboard Inc. | Boonville | Wood Product Manufacturing | 321219 | 20–99 | ◐ LIKELY ACTIVE |
| KMKawasaki Motor MFG. Corp. U.S.A. | Boonville | Machinery Manufacturing | 333618 | 100–499 | ◐ LIKELY ACTIVE |
| SSSubgenre Spirits | Boonville | Beverage and Tobacco Product Manufacturing | 312140 | — | ◐ LIKELY ACTIVE |
| CFChouteau Fabricating INC. | Boonville | Fabricated Metal Product Manufacturing | 332117 | — | ◇ UNVERIFIED |
| FBFcs - Boonville Ready Mix | Boonville | Nonmetallic Mineral Product Manufacturing | 327320 | — | ◇ UNVERIFIED |
| FCFischer Concrete - Boonville Portable | Boonville | Nonmetallic Mineral Product Manufacturing | 327320 | — | ◇ UNVERIFIED |
| TPTrp Powder Coating of Central Missouri LLC | Boonville | Fabricated Metal Product Manufacturing | 332812 | — | ◇ UNVERIFIED |
